Checks validity of all inputs of CARNIVAL

isInputValidCarnival(
  perturbations = NULL,
  measurements,
  priorKnowledgeNetwork,
  weights = NULL,
  carnivalOptions = defaultLpSolveCarnivalOptions()
)

Arguments

perturbations: (optional, if inverse CARNIVAL flavour is used further) vector of targets of perturbations.
measurements: vector of the measurements (i.e. DoRothEA/VIPER normalised enrichment scores)
priorKnowledgeNetwork: data frame of the prior knowledge network
weights: (optional) vector of the additional weights: e.g. PROGENy pathway scores or measured protein activities.
carnivalOptions: the list of options for the run. See defaultLpSolveCarnivalOptions(), defaultCplexCarnivalOptions, defaultCbcCarnivalOptions.

Value

TRUE if everything passed the checks.

Examples

load(file = system.file("toy_perturbations_ex1.RData",
                        package="CARNIVAL"))
load(file = system.file("toy_measurements_ex1.RData",
                        package="CARNIVAL"))
load(file = system.file("toy_network_ex1.RData",
                        package="CARNIVAL"))

## lpSolve
#isInputValidCarnival(perturbations = toy_perturbations_ex1,
#                    measurements = toy_measurements_ex1,
#                    priorKnowledgeNetwork = toy_network_ex1,
#                    carnivalOptions = defaultLpSolveCarnivalOptions())