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Imports the dataset from: https://omnipathdb.org/interactions?datasets=pathwayextra, which contains activity flow interactions without literature reference. The activity flow interactions supported by literature references are part of the omnipath dataset.

## Usage

import_pathwayextra_interactions(
resources = NULL,
organism = 9606,
fields = NULL,
default_fields = TRUE,
references_by_resource = TRUE,
exclude = NULL,
...
)

## Arguments

resources

interactions not reported in these databases are removed. See get_interaction_resources for more information.

organism

Interactions are available for human, mouse and rat. Choose one of those: 9606 human (default), 10116 rat or 10090 Mouse.

fields

The user can define here the fields to be added. If used, set the next argument, default_fields, to FALSE.

default_fields

whether to include the default fields (columns) for the query type. If FALSE, only the fields defined by the user in the fields argument will be added.

references_by_resource

if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique.

exclude

Character: datasets or resources to exclude.

...

optional additional arguments

## Value

A dataframe containing activity flow interactions between proteins without literature reference

## See also

• get_interaction_resources

• import_all_interactions

• interaction_graph

• print_interactions

## Examples

interactions <-
import_pathwayextra_interactions(
resources = c('BioGRID', 'IntAct'),
organism = 9606
)