NicheNet gene regulatory network from Harmonizome

Builds gene regulatory network prior knowledge for NicheNet using Harmonizome

Usage

nichenet_gr_network_harmonizome(
  datasets = c("cheappi", "encodetfppi", "jasparpwm", "transfac", "transfacpwm",
    "motifmap", "geotf", "geokinase", "geogene"),
  ...
)

Arguments

datasets

The datasets to use. For possible values please refer to default value and the Harmonizome webpage.

...

Ignored.

Value

Data frame with gene regulatory interactions in NicheNet format.

See also

• nichenet_gr_network

• harmonizome_download

Examples

# use only JASPAR and TRANSFAC:
hz_gr_network <- nichenet_gr_network_harmonizome(
    datasets = c('jasparpwm', 'transfac', 'transfacpwm')
)