NicheNet gene regulatory network from PathwayCommons

Builds gene regulation prior knowledge for NicheNet using PathwayCommons.

Usage

nichenet_gr_network_pathwaycommons(
  interaction_types = "controls-expression-of",
  ...
)

Arguments

interaction_types

Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage.

...

Ignored.

Value

Data frame with gene regulatory interactions in NicheNet format.

See also

• nichenet_gr_network

• pathwaycommons_download

Examples

pc_gr_network <- nichenet_gr_network_pathwaycommons()