Installation

PHONEMeS

For the installation of the most recent implementation of PHONEMeS the user can do this directly from GitHub by using the devtools package:

# Install PHONEMeS from Github using devtools
install.packages('devtools') # in case devtools hasn't been installed
devtools::install_github('saezlab/PHONEMeS')

PHONEMeS-stoch (not recommended)

For the installation of the old stochastic implementation (PHONEMeS-stoch), download the tar-file of the package (can be found here). Open R and type:

install.packages("PHONEMeS_0.2.7.tar.gz", repos=NULL)