FUNKI is accessible on shinyapps or to run locally.
| :warning: | Online version does NOT support CARNIVAL/COSMOS to be run with cplex or cbc. This software is licenced-based, so the LOCAL version of FUNKI is advided (previous installation of the selected software) | |—————|:————————|
To run FUNKI locally, there are different options to fit all possible users:
In an R session, run the line below to launch FUNKI:
shiny::runGitHub(repo = "ShinyFUNKI", username = "saezlab", subdir = "FUNKI")
| :point_up: | Remember to have all required packages installed beforehand! | |—————|:————————|
renv.lock lockfile (
renv packaged) has recorded the state of this project’s private library.
It can be used to restore the state of that library as required by calling
In an R session, run the line below to launch FUNKI once this repo has been downloaded/cloned:
As in case 1, all required packages must be installed beforehand.
renv.lock lockfile can be used to resore the library by calling
The docker file is provided to create a docker imagine.
To build the docker image:
FUNKI/renv.lockin the directory the imagine is going to be created.
Dockerfileis located), run:
docker build -t funki .
This process takes some time (~ 2400s).
To create a container just run:
docker run --rm -p 3838:3838 funki
And there it is, running on
| :point_up: | Remember to install cplex or cbc to use CARNIVAL/COSMOS with these softwares! | |—————|:————————|