Index A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | U | V | X A AcyclicFlow() (corneto.backend.Backend method) Attr (class in corneto) Attributes (class in corneto) available_backends() (in module corneto) available_solvers() (corneto.backend.Backend method) (corneto.backend.CvxpyBackend method) (corneto.backend.PicosBackend method) B Backend (class in corneto.backend) bfs_search() (in module corneto.methods.carnival) BINARY (corneto.backend.VarType attribute) build() (corneto.backend.Backend method) (corneto.backend.CvxpyBackend method) (corneto.backend.PicosBackend method) C CONTINUOUS (corneto.backend.VarType attribute) copy() (corneto.Graph method) corneto module corneto.backend module corneto.methods module corneto.methods.carnival module corneto.methods.metabolism module corneto.methods.metabolism.fba module corneto.methods.shortest_path module corneto.methods.signaling module corneto.methods.steiner module corneto.utils module create_exact_multi_steiner_tree() (in module corneto.methods.steiner) create_flow_graph() (in module corneto.methods.signaling) CUSTOM_ATTR (corneto.Attr attribute) CvxpyBackend (class in corneto.backend) D default_sign_loss() (in module corneto.methods.signaling) DIRECTED (corneto.EdgeType attribute) E EDGE_TYPE (corneto.Attr attribute) EdgeType (class in corneto) evaluate_gpr_expression() (in module corneto.methods.metabolism) evaluate_gpr_rules() (in module corneto.methods.metabolism) exact_steiner_tree() (in module corneto.methods.steiner) extract_subgraph() (corneto.Graph method) F fba_problem() (in module corneto.methods.metabolism.fba) FBAProblem (class in corneto.methods.metabolism.fba) filter_graph() (corneto.Graph method) Flow() (corneto.backend.Backend method) from_cobra_model() (corneto.Graph static method) from_miom_model() (corneto.Graph static method) from_sif() (corneto.Graph static method) from_sif_tuples() (corneto.Graph static method) G get_attr() (corneto.Attributes method) get_edge() (corneto.Graph method) get_fluxes() (corneto.methods.metabolism.fba.FBAProblem method) get_fluxes_dict() (corneto.methods.metabolism.fba.FBAProblem method) get_genes_from_gpr() (in module corneto.methods.metabolism) get_graph_attributes() (corneto.Graph method) get_library_version() (in module corneto.utils) get_result() (in module corneto.methods.carnival) get_selected_edges() (in module corneto.methods.carnival) get_symbols() (corneto.backend.Backend static method) get_unique_genes() (in module corneto.methods.metabolism) Graph (class in corneto) H has_attr() (corneto.Attributes method) heuristic_carnival() (in module corneto.methods.carnival) hstack() (corneto.backend.Backend method) I import_optional_module() (in module corneto.utils) Indicator() (corneto.backend.Backend method) Indicators() (corneto.backend.Backend method) info() (in module corneto) INTEGER (corneto.backend.VarType attribute) is_available() (corneto.backend.Backend method) L linear_and() (corneto.backend.Backend method) linear_or() (corneto.backend.Backend method) M module corneto corneto.backend corneto.methods corneto.methods.carnival corneto.methods.metabolism corneto.methods.metabolism.fba corneto.methods.shortest_path corneto.methods.signaling corneto.methods.steiner corneto.utils multicondition_imat() (in module corneto.methods.metabolism.fba) N NonZeroIndicator() (corneto.backend.Backend method) P Parameter() (corneto.backend.Backend method) (corneto.backend.CvxpyBackend method) (corneto.backend.PicosBackend method) PicosBackend (class in corneto.backend) Problem() (corneto.backend.Backend method) R reachability_graph() (in module corneto.methods.carnival) read_dataset() (in module corneto.methods.carnival) reverse() (corneto.Graph method) runInverseCarnival() (in module corneto.methods.carnival) runVanillaCarnival() (in module corneto.methods.carnival) S set_attr() (corneto.Attributes method) shortest_path() (in module corneto.methods.shortest_path) signflow() (in module corneto.methods.signaling) signflow_constraints() (in module corneto.methods.signaling) solve() (corneto.backend.Backend method) solve_shortest_path() (in module corneto.methods.shortest_path) SOURCE_ATTR (corneto.Attr attribute) T TARGET_ATTR (corneto.Attr attribute) U UNDIRECTED (corneto.EdgeType attribute) V VALUE (corneto.Attr attribute) Variable() (corneto.backend.Backend method) (corneto.backend.CvxpyBackend method) (corneto.backend.PicosBackend method) VarType (class in corneto.backend) version() (corneto.backend.Backend method) vstack() (corneto.backend.Backend method) X Xor() (corneto.backend.Backend method)
