Collection of annotated enzyme-substrate post translational modifications obtained from OmniPath.

data(omnipath_ptm)

Format

An object of class “data.frame” with 39201 rows (PTMs) and 12 variables:

enzyme

substrate

enzyme_genesymbol

substrate_genesymbol

residue_type

residue_offset

modification

sources

references

curation_effort

n_references

n_resources

Source

Default resource collection of OmniPath: http://omnipathdb.org/ptms?fields=sources,references&genesymbols=1, version of Feb 5th, 2020.

References

Turei, D., Korcsmaros, T. and Saez-Rodriguesz, J. (2016) Nature Methods. 13(12), 966--967.

Examples

omnipath_ptm = omnipath_ptm