inst/CITATION
Garcia-Alonso L, Holland CH, Ibrahim MM, Turei D, Saez-Rodriguez J. 'Benchmark and integration of resources for the estimation of human transcription factor activities.' Genome Research. 2019. DOI: 10.1101/gr.240663.118.
@Article{,
author = {Luz Garcia-Alonso and Christian H. Holland and Mahmoud M. Ibrahim and Denes Turei and Julio Saez-Rodriguez},
title = {Benchmark and integration of resources for the estimation of human transcription factor activities},
journal = {Genome Research},
year = {2019},
doi = {10.1101/gr.240663.118},
}
Badia-i-Mompel P., Vélez Santiago J., Braunger J., Geiss C., Dimitrov D., Müller-Dott S., Taus P., Dugourd A., Holland C.H., Ramirez Flores R.O. and Saez-Rodriguez J. 2022. decoupleR: Ensemble of computational methods to infer biological activities from omics data. Bioinformatics Advances. https://doi.org/10.1093/bioadv/vbac016
@Article{,
author = {Pau Badia-i-Mompel and Jesús Vélez Santiago and Jana Braunger and Celina Geiss and Daniel Dimitrov and Sophia Müller-Dott and Petr Taus and Aurelien Dugourd and Christian H. Holland and Ricardo O. Ramirez Flores and Julio Saez-Rodriguez},
title = {decoupleR: ensemble of computational methods to infer biological activities from omics data},
journal = {Bioinformatics Advances},
year = {2022},
doi = {https://doi.org/10.1093/bioadv/vbac016},
}
Müller-Dott S., Tsirvouli E., Vázquez M., Ramirez Flores R.O., Badia-i-Mompel P., Fallegger R., Lægreid A. and Saez-Rodriguez J. 2023. Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. bioRxiv. https://doi.org/10.1101/2023.03.30.534849
@Article{,
author = {Sophia Müller-Dott and Eirini Tsirvouli and Miguel Vázquez and Ricardo O. Ramirez Flores and Pau Badia-i-Mompel and Robin Fallegger and Astrid Lægreid and Julio Saez-Rodriguez},
title = {Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities},
journal = {bioRxiv},
year = {2023},
doi = {https://doi.org/10.1101/2023.03.30.534849},
}