Changelog

All notable changes to this project are tracked in the repository changelog.

Unreleased

No unreleased changes are documented yet.

Preprocessing utilities for filtering views, samples, genes, highly variable genes, and cell-type-specific AnnData objects.
Multi-view construction helpers for raw count storage, view annotation, merging, functional view conversion, membership matrices, and spatial neighborhood enrichment features.
Downstream analysis functions for factor associations, explained variance summaries, p-value matrices, gene set loading summaries, information networks, multicellular networks, and factor projection.
Plotting utilities for view-level coverage, p-value tiles, multicellular functional communication summaries, multicellular networks, feature counts per view, and communication overview plots.
Tutorial notebooks for MOFA, SOFA-guided factors, experimental groups, functional views, pathway-guided functional views, spatial data, and patpy patient-map evaluation.
Patpy integration through a precomputed sample representation adapter.

For the canonical changelog file in the repository root, see CHANGELOG.md.