Function to
Usage
LoadMetalinks(
types = NULL,
cell_location = NULL,
tissue_location = NULL,
biospecimen_location = NULL,
disease = NULL,
pathway = NULL,
hmdb_ids = NULL,
uniprot_ids = NULL,
SaveAs_Table = "csv",
FolderPath = NULL
)
Arguments
- types
Desired edge types. Options are: "lr", "pd", where 'lr' stands for 'ligand-receptor' and 'pd' stands for 'production-degradation'.default: NULL
- cell_location
Desired metabolite cell locations. Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?". Options are: "Cytoplasm", "Endoplasmic reticulum", "Extracellular", "Lysosome" , "Mitochondria", "Peroxisome", "Membrane", "Nucleus", "Golgi apparatus" , "Inner mitochondrial membrane". default: NULL
- tissue_location
Desired metabolite tissue locations. Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?". Options are: "Placenta", "Adipose Tissue","Bladder", "Brain", "Epidermis","Kidney", "Liver", "Neuron", "Pancreas", "Prostate", "Skeletal Muscle", "Spleen", "Testis", "Thyroid Gland", "Adrenal Medulla", "Erythrocyte","Fibroblasts", "Intestine", "Ovary", "Platelet", "All Tissues", "Semen", "Adrenal Gland", "Adrenal Cortex", "Heart", "Lung", "Hair", "Eye Lens", "Leukocyte", Retina", "Smooth Muscle", "Gall Bladder", "Bile", "Bone Marrow", "Blood", "Basal Ganglia", "Cartilage". default: NULL
- biospecimen_location
Desired metabolite biospecimen locations.Pass selection using c("Select1", "Select2", "Selectn").View options setting "?". "Blood", "Feces", "Saliva", "Sweat", "Urine", "Breast Milk", "Cellular Cytoplasm", "Cerebrospinal Fluid (CSF)", "Amniotic Fluid" , "Aqueous Humour", "Ascites Fluid", "Lymph", "Tears", "Breath", "Bile", "Semen", "Pericardial Effusion".default: NULL
- disease
Desired metabolite diseases.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?". default: NULL
- pathway
Desired metabolite pathways.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?".default: NULL
- hmdb_ids
Desired HMDB IDs.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?".default: NULL
- uniprot_ids
Desired UniProt IDs.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?".default: NULL
- SaveAs_Table
Optional: File types for the analysis results are: "csv", "xlsx", "txt". Default = "csv"
- FolderPath
Optional: Path to the folder the results should be saved at. default: NULL