Function to add metabolite HMDB IDs to existing genesets based on cosmosR prior knowledge

Function to add metabolite HMDB IDs to existing genesets based on cosmosR prior knowledge

Usage

Make_GeneMetabSet(
  Input_GeneSet,
  SettingsInfo = c(Target = "gene"),
  PKName = NULL,
  SaveAs_Table = "csv",
  FolderPath = NULL
)

Arguments

Input_GeneSet

Dataframe with two columns for source (=term) and Target (=gene), e.g. Hallmarks.

SettingsInfo

Optional: Column name of Target in Input_GeneSet. Default = c(Target="gene")

PKName

Optional: Name of the prior knowledge resource. default: NULL

SaveAs_Table

Optional: File types for the analysis results are: "csv", "xlsx", "txt". Default = "csv"

FolderPath

Optional: String which is added to the resulting folder name default: NULL