Function to add metabolite HMDB IDs to existing genesets based on cosmosR prior knowledge

Function to add metabolite HMDB IDs to existing genesets based on cosmosR prior knowledge

Usage

make_gene_metab_set(
  input_pk,
  metadata_info = c(Target = "gene"),
  pk_name = NULL,
  save_table = "csv",
  path = NULL
)

Arguments

input_pk

dataframe with two columns for source (=term) and Target (=gene), e.g. Hallmarks.

metadata_info

Optional: Column name of Target in input_pk. Default = c(Target="gene")

pk_name

Optional: Name of the prior knowledge resource. default: NULL

save_table

Optional: File types for the analysis results are: "csv", "xlsx", "txt". Default = "csv"

path

Optional: String which is added to the resulting folder name default: NULL