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This section collects some useful HowTo tutorials and Use Case notebooks.

Notebook gallery

Main tutorial notebooks.

Step-by-step tutorials

  • Tutorial index

    Entry point for the staged tutorial series.

    Open notebook

  • Quickstart graph basics

    First hands-on tutorial covering core graph construction and inspection.

    Open notebook

  • Attributes, views, and indexing

    Focused walkthrough of annotations, indexing helpers, and graph views.

    Open notebook

  • Slices and multilayer workflows

    Practical examples for slicing, layering, and multilayer analysis patterns.

    Open notebook

  • Traversal and history

    Traversal helpers and change-tracking workflows.

    Open notebook

  • IO and interoperability

    Reading, writing, and exchanging data with supported formats and tools.

    Open notebook

Showcase and orientation

  • AnnNet Showcase

    Broad introduction. Overview of graph structure, interoperability, SBML-related examples, and .annnet I/O.

    Open notebook

  • AnnNet Demo

    Shorter walkthrough. A shorter hands-on introduction to the core object model.

    Open notebook

Use-case notebooks

  • Use Case 1

    Use case 1. A rendered use-case notebook for a more guided applied example.

    Open notebook

  • Use Case 2

    Use case 2. HEK293 multilayer network example.

    Open notebook

Multilayer biology

  • Multilayer Systems Biology

    Main example. Main multilayer biology example with Polars-backed tables.

    Open notebook

  • DataFrame backends

    Lighter environment. Similar example without the Polars dependency.

    Open notebook