Prints the methods available in decoupleR. The first column correspond to the function name in decoupleR and the second to the method's full name.
Examples
show_methods()
#> # A tibble: 12 × 2
#> Function Name
#> <chr> <chr>
#> 1 run_aucell AUCell
#> 2 run_consensus Consensus score between methods
#> 3 run_fgsea Fast Gene Set Enrichment Analysis (FGSEA)
#> 4 run_gsva Gene Set Variation Analysis (GSVA)
#> 5 run_mdt Multivariate Decision Trees (MDT)
#> 6 run_mlm Multivariate Linear Model (MLM)
#> 7 run_ora Over Representation Analysis (ORA)
#> 8 run_udt Univariate Decision Tree (UDT)
#> 9 run_ulm Univariate Linear Model (ULM)
#> 10 run_viper Virtual Inference of Protein-activity by Enriched Regulon anal…
#> 11 run_wmean Weighted Mean (WMEAN)
#> 12 run_wsum Weighted Sum (WSUM)