Shows available resources in Omnipath. For more information visit the official website for Omnipath.
Source:R/utils-omnipath.R
show_resources.RdShows available resources in Omnipath. For more information visit the official website for Omnipath.
Examples
decoupleR::show_resources()
#> [1] "Adhesome" "Almen2009" "Baccin2019"
#> [4] "CORUM_Funcat" "CORUM_GO" "CSPA"
#> [7] "CSPA_celltype" "CancerDrugsDB" "CancerGeneCensus"
#> [10] "CancerSEA" "CellCall" "CellCellInteractions"
#> [13] "CellChatDB" "CellChatDB_complex" "CellPhoneDB"
#> [16] "CellPhoneDB_complex" "CellTalkDB" "CellTypist"
#> [19] "Cellinker" "Cellinker_complex" "ComPPI"
#> [22] "CytoSig" "DGIdb" "DisGeNet"
#> [25] "EMBRACE" "Exocarta" "GO_Intercell"
#> [28] "GPCRdb" "Guide2Pharma" "HGNC"
#> [31] "HPA_secretome" "HPA_subcellular" "HPA_tissue"
#> [34] "HPMR" "HumanCellMap" "ICELLNET"
#> [37] "ICELLNET_complex" "IntOGen" "Integrins"
#> [40] "InterPro" "KEGG-PC" "Kirouac2010"
#> [43] "LOCATE" "LRdb" "Lambert2018"
#> [46] "MCAM" "MSigDB" "Matrisome"
#> [49] "MatrixDB" "Membranome" "NetPath"
#> [52] "OPM" "PROGENy" "PanglaoDB"
#> [55] "Phobius" "Phosphatome" "Ramilowski2015"
#> [58] "Ramilowski_location" "SIGNOR" "SignaLink_function"
#> [61] "SignaLink_pathway" "Surfaceome" "TCDB"
#> [64] "TFcensus" "TopDB" "UniProt_family"
#> [67] "UniProt_keyword" "UniProt_location" "UniProt_tissue"
#> [70] "UniProt_topology" "Vesiclepedia" "Wang"
#> [73] "Zhong2015" "connectomeDB2020" "iTALK"
#> [76] "kinase.com" "scConnect" "scConnect_complex"
#> [79] "talklr"