Compute cross-talk score from a Seurat Object (DEPRECATED) — cytotalk_score • liana

Compute cross-talk score from a Seurat Object (DEPRECATED)

Usage

cytotalk_score(lr_res, sce, score_col, assay.type, seed, ...)

Arguments

lr_res: liana_pipe results
sce: SingleCellExperiment object
score_col: name of the score column
assay.type: data slot to be used
seed: random seed
...: placeholder

Details

This function executes all the required functions to extract and compute the cross-talk scores as defined by the Cytotalk authors.