Function to get abundance summary
Usage
get_abundance_summary(
sce,
sample_col,
idents_col,
min_cells = 10,
min_samples = 3,
min_prop = 0.2
)Arguments
- sce
SingleCellExperiment Object
- sample_col
column with sample ids
- idents_col
column with cell identity (cell type) ids
- min_cells
minimum cells per identity in each sample
- min_samples
minimum samples per cell identity
- min_prop
minimum proportion of samples in which a cell identity is present (with at least `min_cells`)