Wrapper Function to obtain scores via liana_pipe

Usage

liana_call(method, lr_res, ...)

method

name of the method to be called

lr_res

ligand-receptor DE results and other stats between clusters

...

Arguments passed on to liana_pipe

sce: SingleCellExperiment Object
op_resource: resource tibble obtained via liana::select_resource
assay: assay to be used ("RNA" by default)
assay.type: - the type of data to be used to calculate the means (logcounts by default), available options are: "counts" and "logcounts"
verbose: logical for verbosity
cell.adj: cell adjacency tibble/dataframe /w weights by which we will `multiply` the relevant columns. Any cell pairs with a weights of 0 will be filtered out. Note that if working with LIANA's default methods, we suggest weights >= 0 & =< 1. This ensure that all methods' score will be meaningfully weighed without changing the interpretation of their scores, thus allow one to filter SCA, rank NATMI, etc.
test.type: String specifying the type of pairwise test to perform - a t-test with "t", a Wilcoxon rank sum test with "wilcox", or a binomial test with "binom".
pval.type: A string specifying how p-values are to be combined across pairwise comparisons for a given group/cluster.
base: base for conversion from log-tranformed ~CPM back to ~CPM.

lr_res modified to be method-specific