metactivity

Use a mean enrichement statistic with shuffling-based normalisation (preserving metabolic compartment information) to compute the metabolic enzme normalised enrichment score, based on its upstream and downstream metabolites

Usage

metactivity(
  metabolomic_t_table,
  regulons_df,
  compartment_pattern = "",
  k = 1000,
  seed = 1337
)

Arguments

metabolomic_t_table

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regulons_df

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compartment_pattern

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k

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Value

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