Package index
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buildTree() - buildtree
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checkInputs() - checkInputs
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compress_transporters() compress_transporters
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condense_metabolite_set() - condense_metabolite_set
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expressed_genes - expressed_genes
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forestMaker() - forestMaker
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generate_sifAtt() - generate_sifAtt
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get_pure_kegg_ids() get_pure_kegg_ids
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hello() - Hello, World!
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limma_res_to_ttop_list() - limma_res_to_ttop_list
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makeContrastsAlt() makeContrastsAlt
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make_df_and_targets_great_again() make_df_and_targets_great_again
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make_discrete_palette() - make_discrete_palette
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map_pathways_to_metabolites() map_pathways_to_metabolites
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mapping_table - mapping_table
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metactivity() - metactivity
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model_to_pathway_sif() model_to_pathway_sif
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nicePCA() nicePCA
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nitrogen_tracking() nitrogen_tracking
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pathway_HM() - pathway_HM
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plotMetaboliteContribution() - plotMetaboliteContribution
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plot_reaction_network() - plot_reaction_network
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plot_significant_pathways() plot_significant_pathways
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prepare_metabolite_set() - prepare_metabolite_set
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prepare_regulon_df() - prepare_regulon_df
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rearrange_dataframe() rearrange_dataframe
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recon2_redhuman - recon2_redhuman
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remove_cofactors() remove_cofactors
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runLimma() runLimma
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split_transaminases() split_transaminases
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t_table_metactivity_input_formater() - t_table_metactivity_input_formater
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target_set_from_forest_2() - target_set_from_forest_2
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translate_complexes() translate_complexes
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translate_results() - translate_results
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ttopFormatter() ttopFormatter
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ttop_list_to_log2FC_table() - ttop_list_to_log2FC_table
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ttop_list_to_t_table() - ttop_list_to_t_table