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This section collects some useful HowTo tutorials and Use Case notebooks.

Notebook gallery

Step-by-step tutorials

  • Tutorial index

    Overview and suggested reading order for the HowTo notebooks.

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  • Quickstart

    First hands-on tutorial covering core graph construction and inspection.

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  • Attributes & views

    Focused walkthrough of annotations, indexing helpers, and graph views.

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  • IO & interop

    Reading, writing, and exchanging data with supported formats and tools.

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  • Slices

    Practical examples for slicing and view-based analysis patterns.

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  • Hyperedges

    Working with hyperedges and higher-order relationships.

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  • Multilayer

    Layering and multilayer analysis workflows.

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Use-case notebooks

  • Multi-Condition Causal Signaling

    Use case 1. A guided applied example using AnnNet as the hub.

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  • HEK293 multilayer network

    Use case 2. HEK293 heterogeneous biology graph as one AnnNet object.

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Special topics

  • Directed hyperedges & stoichiometry

    Directed hyperedges and stoichiometric relationships.

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  • Multilayer math

    The mathematical representation behind multilayer graphs.

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  • Flexible edge orientation

    Mixing directed and undirected edges in one object.

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