mistyR and Seurat
mistyR and SpatialExperiment/SingleCellExperiment
Fixed display of messages and progress during view generation.
Improved plotting control and display.
Fixed handling of NaN in results.
Vignette output switched from BiocStyle to rmarkdown for pdfs due to BiocStyle issue.
Bugfix: models built with different parameters stored and retrieved from the same cache file.
Avoid calls to os-dependent file.info in tests.
Bugfix: passing arguments to ranger.
Warnings on clearing nonexistent cache folders and tests of performance.
Increased test coverage.
Release version for Bioconductor 3.13.
Fixed a bug in Nystrom approximation for creating paraview.
Added a suite of tests with high coverage.
Cleaner cache control.
Revisions requested by Bioconductor
Removed magrittr from dependencies. Reexported pipe operator. Removed from examples.
Caching turned off by default.
Added parameter for appending performance and coefficient files in run_misty.
Internal functions in views.R are now explicit.
Removed alternatives and additional examples for function use from documentation.
Removed redundant messages, escalated to warnings where required.
run_misty cleans up empty cache directories.
Vignette compatibility with the new release of SpatialExperiment.
Remove Seurat vignette from package due to missing hdf5r binary for R 4.1 on CRAN for MacOS.
README.md figures moved to the cloud.
All passed paths and cache location are normalized.
Changes in the mistyR vignette to reflect changes to insilico evaluation from the paper.
Version with vignettes ready to submit to Bioconductor.
mistyR 0.1.0 (MISTy)
Initial beta release of mistyR (named as MISTy) with function documentation.