Function reference • progeny

All functions

getModel(): Returns the Progeny Model

model_human_full: The full human linear model underlying PROGENy

model_mouse_full: The full mouse linear model underlying PROGENy

progeny(): Calculate PROGENy pathway scores from gene expression

progenyPerm(): Compute progeny pathway scores and assesses significance based on permutations

progenyScatter(): Calculate Progeny Scores with Permutations

saveProgenyPlots(): Function to save Progeny plots

vignette_data: The RNA data used in the progeny vignette