formats the network with readable names
Arguments
- SIF
result SIF of decoupleRnival pipeline
- ATT
result ATT of decoupleRnival pipeline
- HMDB_mapper_vec
a named vector with HMDB Ids as names and desired metabolite names as values.
Examples
# Create a meta network data frame
example_SIF <- data.frame(
source = c("GPX1", "Gene863__GPX1"),
target = c("Gene863__GPX1", "Metab__HMDB0003337_c"),
sign = c(1, 1)
)
example_ATT <- data.frame(
Nodes = c("GPX1", "Gene863__GPX1","Metab__HMDB0003337_c"),
sign = c(1, 1, 1)
)
example_SIF
#> source target sign
#> 1 GPX1 Gene863__GPX1 1
#> 2 Gene863__GPX1 Metab__HMDB0003337_c 1
data("HMDB_mapper_vec")
translated_res <- translate_res(example_SIF,example_ATT,HMDB_mapper_vec)
translated_res$SIF
#> source target sign
#> 1 GPX1 Enzyme863__GPX1 1
#> 2 Enzyme863__GPX1 Metab__Oxiglutatione_c 1