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All functions

HMDB_mapper_vec
Toy Input Transcription Data Set
compress_same_children()
Compress Network by Merging Nodes with Identical Children
cosmos_data()
Create Cosmos Data
createLinearColors()
Create Linear Colors Based on Numeric Input
decompress_moon_result()
Decompress Moon Result
decompress_solution_network()
Decompress Solution Network
decoupleRnival()
DecoupleRnival
default_CARNIVAL_options()
Setting Default CARNIVAL Options
display_node_neighboorhood()
display_node_neighboorhood
extract_nodes_for_ORA()
Extract COSMOS nodes for ORA analysis
filter_incohrent_TF_target()
filter_incohrent_TF_target
format_COSMOS_res()
format_COSMOS_res
format_LR_ressource()
Format Ligand-Receptor Resource
get_moon_scoring_network()
Get Moon Scoring Network
gmt_to_dataframe()
Convert gmt file to data frame
load_tf_regulon_dorothea()
load transcription factor regulon
make_heatmap_color_palette()
Create Heatmap Color Palette
meta_network
Meta Prior Knowledge Network
meta_network_cleanup()
meta_network_cleanup
moon()
moon
prepare_metab_inputs()
add metabolic compartment and metab__ prefix to metabolite IDs
preprocess_COSMOS_metabolism_to_signaling()
Preprocess COSMOS Inputs For Metabolism to Signaling
preprocess_COSMOS_signaling_to_metabolism()
Preprocess COSMOS Inputs For Signaling to Metabolism
print(<cosmos_data>)
Print Cosmos Data Summary Print a summary of cosmos data.
reduce_solution_network()
reduce_solution_network
run_COSMOS_metabolism_to_signaling()
run COSMOS metabolism to signaling
run_COSMOS_signaling_to_metabolism()
run COSMOS signaling to metabolism
toy_RNA
Toy Input Transcription Data Set
toy_metabolic_input
Toy Metabolic Input Data
toy_network
Toy Input Network
toy_signaling_input
Toy Signaling Input
translate_column_HMDB()
Translate Column Using HMDB Mapper
translate_res()
translate_res
wide_ulm_res()
Convert ULM Results to Wide Format