All functions

convert_ensembl_to_entrezid()

convert gene ensembl to entrez id

convert_genesymbols_to_entrezid()

convert gene symbols to entrez id

cosmos_data()

Create Cosmos Data

default_CARNIVAL_options()

Setting Default CARNIVAL Options

display_node_neighboorhood()

display_node_neighboorhood

format_COSMOS_res()

format_COSMOS_res

load_tf_regulon_dorothea()

load transcription factor regulon

load_tf_regulon_dorothea_omnipath()

load_tf_regulon_dorothea_omnipath

meta_network

Meta Prior Knowledge Network

metabolite_to_pubchem

Metabolite-PubChem CID Mapping

omnipath_ptm

OmniPath PTMs

prepare_metabolomics_data()

format COSMOS metabolic input

preprocess_COSMOS_metabolism_to_signaling()

Preprocess COSMOS Inputs For Metabolism to Signaling

preprocess_COSMOS_signaling_to_metabolism()

Preprocess COSMOS Inputs For Signaling to Metabolism

print(<cosmos_data>)

Print Cosmos Data Summary Print a summary of cosmos data.

run_COSMOS_metabolism_to_signaling()

run COSMOS metabolism to signaling

run_COSMOS_signaling_to_metabolism()

run COSMOS signaling to metabolism

toy_RNA

Toy Input Transcription Data Set

toy_metabolic_input

Toy Metabolic Input Data

toy_network

Toy Input Network

toy_signaling_input

Toy Signaling Input