Function reference
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HMDB_mapper_vec - Toy Input Transcription Data Set
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compress_same_children() - Compress Network by Merging Nodes with Identical Children
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cosmos_data() - Create Cosmos Data
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decompress_solution_network() - Decompress Solution Network
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decoupleRnival() - DecoupleRnival
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default_CARNIVAL_options() - Setting Default CARNIVAL Options
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display_node_neighboorhood() - display_node_neighboorhood
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extract_nodes_for_ORA() - Extract COSMOS nodes for ORA analysis
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filter_incohrent_TF_target() - filter_incohrent_TF_target
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format_COSMOS_res() - format_COSMOS_res
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gmt_to_dataframe() - Convert gmt file to data frame
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load_tf_regulon_dorothea() - load transcription factor regulon
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meta_network - Meta Prior Knowledge Network
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meta_network_cleanup() - meta_network_cleanup
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moon() - moon
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prepare_metab_inputs() - add metabolic compartment and metab__ prefix to metabolite IDs
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preprocess_COSMOS_metabolism_to_signaling() - Preprocess COSMOS Inputs For Metabolism to Signaling
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preprocess_COSMOS_signaling_to_metabolism() - Preprocess COSMOS Inputs For Signaling to Metabolism
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print(<cosmos_data>) - Print Cosmos Data Summary Print a summary of cosmos data.
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reduce_solution_network() - reduce_solution_network
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run_COSMOS_metabolism_to_signaling() - run COSMOS metabolism to signaling
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run_COSMOS_signaling_to_metabolism() - run COSMOS signaling to metabolism
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toy_RNA - Toy Input Transcription Data Set
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toy_metabolic_input - Toy Metabolic Input Data
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toy_network - Toy Input Network
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toy_signaling_input - Toy Signaling Input
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translate_res() - translate_res