Deal with detected input features. If we only have one ID, could it also be another one? — ClusterPK • MetaProViz

Deal with pathway overlap in prior knowledge

Usage

ClusterPK(
  InputData,
  SettingsInfo = c(InputID = "MetaboliteID", GroupingVariable = "term"),
  Clust = "Graph",
  matrix = "percentage",
  min = 2
)

Arguments

InputData: Dataframe with at least one column with the target (e.g. metabolite) and a column source (e.g. term).
SettingsInfo: = c(InputID="MetaboliteID", GroupingVariable="term"),

Examples

KEGG_Pathways <- MetaProViz::LoadKEGG()
#> Cached file loaded from: ~/.cache/KEGG_Metabolite.rds
InputData = KEGG_Pathways