Input and Output (corneto.io)#

This page documents the public API for the corneto.io package.

Corneto I/O module.

This module provides functions for loading and saving biological networks in various formats, including SIF and GML. It also includes functions to convert metabolic and signaling models to network graphs.

Graphs#

load_graph_from_sif(sif_file[, delimiter, ...])

Create graph from Simple Interaction Format (SIF) file.

load_graph_from_sif_tuples(tuples)

Create graph from iterable of SIF tuples.

Metabolism#

parse_cobra_model(model)

Parse a COBRA metabolic model and extract its core components.

cobra_model_to_graph(model)

Create graph from COBRA metabolic model.

import_cobra_model(path[, quiet])

Import a COBRA model from an SBML file and convert it to a CORNETO graph.

import_miom_model(model_or_path)

Create graph from MIOM metabolic model.

Signaling#

load_graph_from_sif(sif_file[, delimiter, ...])

Create graph from Simple Interaction Format (SIF) file.

load_graph_from_sif_tuples(tuples)

Create graph from iterable of SIF tuples.
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