Network inference (corneto.methods.future)

Network inference methods

Collection of customizable network inference methods implemented in CORNETO.

Signaling

Network methods to infer signaling networks from omics data.

CarnivalFlow([lambda_reg, ...])	Flow-base, multi-sample CARNIVAL method for intracellular signaling.
CarnivalILP([beta_weight, max_dist, ...])	Improved version of the original CARNIVAL ILP method implementation.

Metabolism

Network methods for flux balance analysis in metabolic networks.

MultiSampleFBA([lambda_reg, beta_reg, ...])

Flux Balance Analysis (FBA) method for multiple samples.