Find additional potential IDs for "kegg", "pubchem", "chebi", "hmdb"

Usage

equivalent_id(
  data,
  metadata_info = c(InputID = "MetaboliteID"),
  from = "hmdb",
  save_table = "csv",
  path = NULL
)

Arguments

data: dataframe with at least one column with the detected metabolite IDs (one ID per row).
metadata_info: Optional: Column name of metabolite IDs. Default = list(InputID="MetaboliteID")
from: ID type that is present in your data. Choose between "kegg", "pubchem", "chebi", "hmdb". Default = "hmdb"
save_table: Optional: File types for the analysis results are: "csv", "xlsx", "txt". Default = "csv"
path: Optional: Path to the folder the results should be saved at. Default = NULL

Value

Input DF with additional column including potential additional IDs.

Examples

DetectedIDs <- cellular_meta%>%tidyr::drop_na()
Res <- MetaProViz::equivalent_id(data= DetectedIDs, metadata_info = c(InputID="HMDB"), from = "hmdb")
#> Warning: The following IDs are duplicated and removed: HMDB0000725, HMDB0000267, HMDB0000755
#> chebi is used to find additional potential IDs for hmdb.