Annotated metabolite-protein interactions from MetalinksDB

Usage

metsigdb_metalinks(
  types = NULL,
  cell_location = NULL,
  tissue_location = NULL,
  biospecimen_location = NULL,
  disease = NULL,
  pathway = NULL,
  hmdb_ids = NULL,
  uniprot_ids = NULL,
  save_table = "csv",
  path = NULL
)

Arguments

types: Desired edge types. Options are: "lr", "pd", where 'lr' stands for 'ligand-receptor' and 'pd' stands for 'production-degradation'.default: NULL
cell_location: Desired metabolite cell locations. Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?". Options are: "Cytoplasm", "Endoplasmic reticulum", "Extracellular", "Lysosome" , "Mitochondria", "Peroxisome", "Membrane", "Nucleus", "Golgi apparatus" , "Inner mitochondrial membrane". default: NULL
tissue_location: Desired metabolite tissue locations. Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?". Options are: "Placenta", "Adipose Tissue","Bladder", "Brain", "Epidermis","Kidney", "Liver", "Neuron", "Pancreas", "Prostate", "Skeletal Muscle", "Spleen", "Testis", "Thyroid Gland", "Adrenal Medulla", "Erythrocyte","Fibroblasts", "Intestine", "Ovary", "Platelet", "All Tissues", "Semen", "Adrenal Gland", "Adrenal Cortex", "Heart", "Lung", "Hair", "Eye Lens", "Leukocyte", Retina", "Smooth Muscle", "Gall Bladder", "Bile", "Bone Marrow", "Blood", "Basal Ganglia", "Cartilage". default: NULL
biospecimen_location: Desired metabolite biospecimen locations.Pass selection using c("Select1", "Select2", "Selectn").View options setting "?". "Blood", "Feces", "Saliva", "Sweat", "Urine", "Breast Milk", "Cellular Cytoplasm", "Cerebrospinal Fluid (CSF)", "Amniotic Fluid" , "Aqueous Humour", "Ascites Fluid", "Lymph", "Tears", "Breath", "Bile", "Semen", "Pericardial Effusion".default: NULL
disease: Desired metabolite diseases.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?". default: NULL
pathway: Desired metabolite pathways.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?".default: NULL
hmdb_ids: Desired HMDB IDs.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?".default: NULL
uniprot_ids: Desired UniProt IDs.Pass selection using c("Select1", "Select2", "Selectn"). View options setting "?".default: NULL
save_table: Optional: File types for the analysis results are: "csv", "xlsx", "txt". Default = "csv"
path: Optional: Path to the folder the results should be saved at. default: NULL